Few things feel more comforting than a warm muffin filled with apple chunks, pumpkin puree, and a buttery, spiced streusel topping. These Apple Pumpkin Streusel Muffins bring together the best of fall baking in one small batch—just four perfectly portioned muffins. With crisp Honeycrisp apples and cozy pumpkin pie spice, they’re ideal for chilly mornings, sweet afternoon breaks, or anytime you crave something homemade and heartwarming. Even if you’re a beginner in the kitchen, this recipe is simple, rewarding, and so satisfying. Ready to make your kitchen smell like autumn?
Why You’ll Love This Recipe for Apple Pumpkin Streusel Muffins
This Apple Pumpkin Streusel Muffins recipe is the kind you’ll turn to again and again—and here’s why:
- Big Flavor, Small Batch: Just four muffins—no leftovers, no waste.
- Beginner-Friendly: Simple techniques and ingredients you likely already have.
- Fall-Inspired: Packed with apple, pumpkin, and warm spices.
- Perfect Texture: Moist muffin base with a crunchy, buttery streusel top.
And bonus: These muffins look like they came straight from a bakery but take less than 30 minutes from start to finish.
The Story Behind Apple Pumpkin Streusel Muffins
Let’s dig into the cozy background of these muffins:
- Pumpkin puree has long been used in American baking, dating back to colonial days.
- Streusel topping hails from German baking, adding buttery crunch and texture.
- Apples like Honeycrisp are a fall favorite, balancing sweet and tart flavors beautifully.
- Small-batch baking is ideal for couples, students, or anyone craving fresh without overbaking.

Key Ingredients in Apple Pumpkin Streusel Muffins
Here are the flavor-packed essentials behind these muffins:
- Pumpkin Purée – Brings rich color and moisture with subtle sweetness.
- Honeycrisp Apples – Crisp and tart; they add texture and freshness.
- Sour Cream – Adds tenderness and a slight tang to balance the sweetness.
- Pumpkin Pie Spice – A cozy mix of cinnamon, nutmeg, and cloves in one spoonful.
- Brown & White Sugar – Brown sugar deepens flavor; white sugar balances the streusel crunch.
- Butter – Used cold for a crumbly, melt-in-your-mouth streusel topping.
How to Make Apple Pumpkin Streusel Muffins
1. Make the Streusel Topping
In a small bowl, combine flour, cubed cold butter, brown and white sugars, a pinch of salt, and pumpkin pie spice. Use your fingers or a fork to press and rub until the mixture forms coarse crumbs. Stir in 1½ tablespoons of finely diced apples. Chill the mixture in the fridge while prepping the batter.
2. Preheat and Prepare
Set your oven to 425°F and position the rack in the middle. Line 4 muffin cups with liners or grease them lightly.
3. Mix the Wet Ingredients
In a medium bowl, mix sour cream, pumpkin puree, apple juice, both sugars, egg yolk, and vanilla until smooth. Stir in the remaining cubed apples.
4. Mix the Dry Ingredients
In a separate bowl, whisk together flour, baking soda, pumpkin pie spice, and salt.
5. Combine Wet and Dry
Sprinkle the dry mixture over the wet. Gently fold together using a spatula just until no flour streaks remain. Be careful not to overmix!
6. Fill and Top
Evenly divide the batter between the four muffin cups. Sprinkle each with the chilled apple streusel topping.
7. Bake
Bake at 425°F for 5 minutes. Then, without opening the oven, reduce the temperature to 350°F and bake for 11–13 more minutes. The muffins are ready when a toothpick inserted into the center comes out mostly clean.
8. Cool
Let muffins cool in the pan on a rack for 10 minutes, then move them to the rack to cool completely. Enjoy warm or at room temp.
Apple Pumpkin Streusel Muffins Tips and Twists
Want to perfect these muffins or make them your own? Here’s how:
Tips:
- Use cold butter for the streusel so it stays crumbly when baked.
- Don’t overmix your batter—just fold until combined.
- Dice apples small and evenly for a consistent bite.
- Use room-temperature ingredients for the best texture.
- Chill the streusel before baking for maximum crisp.
Variations:
- Nutty Crunch: Add chopped walnuts or pecans to the batter or streusel.
- Maple Glaze: Drizzle with maple syrup icing after baking for extra sweetness.
- Gluten-Free Option: Use a 1:1 gluten-free flour blend.

Storage, Reheating, and Make-Ahead Tips
Here’s how to keep your muffins tasting bakery-fresh:
- Storage: Store covered at room temperature for 3–5 days.
- Reheating: Warm in the microwave for 10–15 seconds to refresh the texture.
- Make-Ahead: Prepare the streusel and chop the apples the night before for quick assembly the next morning.
Serving Suggestions
These Apple Pumpkin Streusel Muffins shine on their own—but here’s how to make them part of something bigger:
- Fall Brunch: Pair with Simple Avocado Toast with Egg for a cozy sweet-and-savory breakfast.
- Afternoon Tea: Enjoy with hot chai or a spiced latte.
- Mini Dessert Board: Serve with Best Carrot Cake Cookies and Pistachio Muffins for a bakery-style sampler.
- Holiday Breakfast: Great addition to your Thanksgiving or Christmas morning spread.
- Snack Time: Pair with a handful of nuts or a yogurt cup for balance.
Frequently Asked Questions
Can I use applesauce instead of diced apples?
Not for this recipe. Fresh apples add texture that applesauce can’t provide.
Can I double the recipe?
Yes, easily! Just double all ingredients for 8 muffins.
What’s the best apple to use?
Honeycrisp is ideal—sweet, tart, and firm enough to hold up when baked.
Can I use yogurt instead of sour cream?
Yes, full-fat plain Greek yogurt works as a great substitute.
Why bake at two temperatures?
The high initial heat helps the muffins rise quickly for that classic domed top.
Enjoy Your Apple Pumpkin Streusel Muffins
Now that you know how to make these delicious Apple Pumpkin Streusel Muffins, it’s time to grab your mixing bowls and dive in. With their moist, tender crumb and golden cinnamon streusel topping, these muffins deliver the ultimate fall flavor in every bite. Whether you make them as a sweet start to your day or a cozy afternoon snack, they’re sure to bring comfort and joy. Plus, with just four muffins, they’re the perfect size for small households or a personal treat!
Explore More Recipes You’ll Love
If you enjoyed these Apple Pumpkin Streusel Muffins, you’ll love these cozy bakes from our collection:
- Try the Sausage, Egg, and Cheese Muffins for a protein-packed breakfast ready in minutes.
- Want more fall flavor? Bake a batch of our Best Carrot Cake Cookies—soft, spiced, and beginner-friendly.
- For a different muffin mood, check out the From-Scratch Pistachio Muffins—light, nutty, and irresistible.
- Pair your muffins with a savory bite like Quick Crispy Chicken Wraps for a complete lunch combo.

Apple Pumpkin Streusel Muffins Recipe for Fall Baking
Ingredients
Apple Streusel Topping:
- 3 tablespoons all-purpose flour
- 1 ½ tablespoons unsalted butter cold and cubed
- 1 ½ tablespoons light brown sugar
- 2 teaspoons granulated sugar
- Pinch of salt
- ¼ teaspoon ground cinnamon or pumpkin pie spice
- 1 ½ tablespoons diced apples reserved from muffin ingredients
Apple Pumpkin Muffins:
- 1 ½ tablespoons full-fat sour cream room temperature
- 5 tablespoons canned pumpkin puree
- 1 tablespoon apple juice or orange juice or water
- 3 tablespoons granulated sugar
- 2 tablespoons light brown sugar
- 1 large egg yolk room temperature
- ½ teaspoon vanilla extract
- ½ cup fresh apple diced (reserve 1 ½ tbsp for streusel)
- ½ cup + 1 tablespoon all-purpose flour
- ¼ teaspoon baking soda
- ⅛ teaspoon salt
- ¾ teaspoon pumpkin pie spice
Instructions
- Preheat oven to 425°F and line 4 muffin cups with paper liners.
- In a bowl, mix all streusel ingredients except apples using fingers or a fork until crumbly. Stir in 1½ tbsp diced apples. Chill.
- In another bowl, whisk sour cream, pumpkin, juice, both sugars, egg yolk, and vanilla until smooth. Stir in remaining diced apples.
- In a separate bowl, whisk flour, baking soda, salt, and pumpkin pie spice.
- Sprinkle dry mix over wet mixture. Gently fold until just combined—do not overmix.
- Divide batter into muffin cups. Top each with apple streusel.
- Bake at 425°F for 5 minutes, then reduce to 350°F and bake 11–13 more minutes.
- Cool 10 minutes in pan, then transfer to rack to cool completely.